So I really don't understand how money is calculated. 2 weeks ago in game time. I had roughly 2.8 million in cash. Now 2 weeks later I have 6.02 million in cash. But the financials sheet shows my "operating profit/loss" at -319,000 one week and -94,095 the next. How did I end up with 3.2 Million more in cash across that same time period?
Look at the cash flow statements.
Most probably you don't pay leases for for your aircraft yet. The leasing for the first 4 month is paid when you order the aircraft but it counts each month as leasing expenditure in the financial overview.
https://www.airwaysim.com/game/Manual/Office/Accounting/